Protein Disorder Predictors

Linding R, Jensen LJ, Diella F, Bork P, Gibson TJ, Russell RB. "Protein disorder prediction: implications for structural proteomics." Structure. 2003;11(11):1453-9, PMID: 14604535 DisEMBLTM
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT. "Prediction and functional analysis of native disorder in proteins from the three kingdoms of life." J Mol Biol. 2004;337(3):635-45, PMID: 15019783 DISOPRED2
MacCallum B. "Order/Disorder Prediction With Self Organising Maps." CASP 6 meeting, Online paper DRIPPRED
Cheng J, Sweredoski M, Baldi P. "Accurate Prediction of Protein Disordered Regions by Mining Protein Structure Data" Data Mining and Knowledge Discovery. 2005; 11(3):213-222, Online Paper DISpro
Prilusky J, Felder CE, Zeev-Ben-Mordehai T, Rydberg EH, Man O, Beckmann JS, Silman I, Sussman JL. "FoldIndex: a simple tool to predict whether a given protein sequence is intrinsically unfolded." Bioinformatics. 2005;21(16):3435-8, PMID: 15955783 FoldIndex©
Linding R, Russell RB, Neduva V, Gibson TJ. "GlobPlot: Exploring protein sequences for globularity and disorder." Nucleic Acids Res. 2003;31(13):3701-8, PMID: 12824398 GlobPlot 2
Dosztanyi Z, Csizmok V, Tompa P, Simon I. "IUPred: web server for the prediction of intrinsically unstructured regions of proteins based on estimated energy content." Bioinformatics. 2005;21(16):3433-4, PMID: 15955779 IUPred
Romero P, Obradovic Z, Li X, Garner EC, Brown CJ, Dunker AK. "Sequence complexity of disordered protein." Proteins. 2001;42(1):38-48, PMID: 11093259 PONDR®
Coeytaux K, Poupon A. "Prediction of unfolded segments in a protein sequence based on amino acid composition." Bioinformatics. 2005;21(9):1891-900, PMID: 15657106 PreLink
Yang ZR, Thomson R, McNeil P, Esnouf RM. "RONN: the bio-basis function neural network technique applied to the detection of natively disordered regions in proteins." Bioinformatics. 2005;21(16):3369-76, PMID: 15947016 RONN
Vullo A, Bortolami O, Pollastri G, Tosatto S. "Spritz: a server for the prediction of intrinsically disordered regions in protein sequences using kernel machines" Submitted SPRITZ
Garbuzynskiy SO, Lobanov MY, Galzitskaya OV. "To be folded or to be unfolded?" Protein Sci. 2004;13(11):2871-77., PMID 15498936

Galzitskaya OV, Garbuzynskiy SO, Lobanov MY. "Prediction of natively unfolded regions in protein chain." Mol Biol (Mosk). 2006;40(2):341-8., PMID 16637275
FoldUnfold (website available soon)
Vucetic S, Brown CJ, Dunker AK, Obradovic Z. "Flavors of protein disorder." Proteins. 2003 Sep 1;52(4):573-84, PMID: 12910457 VL2
Obradovic Z, Peng K, Vucetic S, Radivojac P, Brown CJ, Dunker AK. "Predicting intrinsic disorder from amino acid sequence." Proteins. 2003;53 Suppl 6:566-72, PMID: 14579347 VL3, VL3H, VL3E
Obradovic Z, Peng K, Vucetic S, Radivojac P, Dunker AK. "Exploiting heterogeneous sequence properties improves prediction of protein disorder." Proteins. 2005;61 Suppl 7:176-82, PMID: 16187360 VSL2
Weathers EA, Paulaitis ME, Woolf TB, Hoh JH. "Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein." FEBS Lett. 2004;576(3):348-52, PMID: 15498561  

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